PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3431_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 314aa    MW: 35416.1 Da    PI: 6.1813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3431_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09175221555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  RrC3431_p3 175 HSLAERARREKISKKMKYLQDLVPGC----NTITGKAGVLDEIINYVQSLQ 221
                 999***********************....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.98E-8168225No hitNo description
SuperFamilySSF474593.14E-16168238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.862170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-17171239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7175221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-8176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSVPERLKWM QQHQQIEVLS QSSNDSPELL QILQFHGSNN DELLQSTFSH FQMLESGFGT  60
KYNMDFCPSH EVMDGCISRT SSCQIDPADT MGVMLKNSVE SRAIFLKNKR KSEVKTREEE  120
KTEKKIKVEA ETESNINNKE ASSDTSKETS KGASEIQKLD YIHVRARRGQ ATDRHSLAER  180
ARREKISKKM KYLQDLVPGC NTITGKAGVL DEIINYVQSL QRQVEFLSMK LAVLNPELEL  240
AVEDLSVNQF QAYLTNFPVV IASKPSVMVD LQLFPLDQQG SLDLSVINPN QTSINAPSAS  300
WETQSHSLFA SVLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533910.0AK353391.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013695785.10.0PREDICTED: transcription factor HBI1-like isoform X1
SwissprotQ9ZPW31e-169HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A078GYI00.0A0A078GYI0_BRANA; BnaA09g09600D protein
STRINGBra037226.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-150bHLH family protein